Bose-Einstein-Kondensat<p>A few images from yesterdays first <a href="https://mstdn.social/tags/HoloDeck" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>HoloDeck</span></a> presentation at Prof. Varshneys <a href="https://mstdn.social/tags/lab" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>lab</span></a> at the <a href="https://mstdn.social/tags/Indian" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Indian</span></a> Institute of <a href="https://mstdn.social/tags/Science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Science</span></a> (<a href="https://mstdn.social/tags/IISc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>IISc</span></a>) in <a href="https://mstdn.social/tags/Bangalore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bangalore</span></a> (<a href="https://mstdn.social/tags/India" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>India</span></a>), where people enjoyed 'playing molecules'.</p><p>Holodeck, also known as the Rechenkraft.net <a href="https://mstdn.social/tags/Molecular" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Molecular</span></a> <a href="https://mstdn.social/tags/AR" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AR</span></a> Environment is our <a href="https://mstdn.social/tags/OpenSource" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenSource</span></a> approach - based on the <span class="h-card" translate="no"><a href="https://mastodon.gamedev.place/@tiltfive" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>tiltfive</span></a></span> hardware - to visualize molecular <a href="https://mstdn.social/tags/structures" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>structures</span></a> in <a href="https://mstdn.social/tags/3D" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>3D</span></a> for <a href="https://mstdn.social/tags/education" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>education</span></a> & <a href="https://mstdn.social/tags/research" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>research</span></a> & <a href="https://mstdn.social/tags/development" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>development</span></a> purposes.</p><p><a href="https://mstdn.social/tags/DIYbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DIYbio</span></a> <a href="https://mstdn.social/tags/instruments" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>instruments</span></a> <a href="https://mstdn.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://mstdn.social/tags/CompChem" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CompChem</span></a> <a href="https://mstdn.social/tags/AugmentedReality" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AugmentedReality</span></a> <a href="https://mstdn.social/tags/STEM" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>STEM</span></a> <a href="https://mstdn.social/tags/MINT" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MINT</span></a></p>
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#bioinformatics
11 posts · 10 participants · 2 posts today
Miguel Ramos<p>I just saw a <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> position finally filled after 2 years! 2 years!</p>
Nicola Romanò<p>Our new preprint is now out! </p><p>Dynamic transcriptional heterogeneity in pituitary corticotrophs</p><p><a href="https://www.biorxiv.org/content/10.1101/2025.04.04.645979v1" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">biorxiv.org/content/10.1101/20</span><span class="invisible">25.04.04.645979v1</span></a></p><p>We analysed publicly available single-cell RNA sequencing data of pituitary gland tissue and looked at corticotrophs, cells that are central to mediate stress responses.</p><p>We identified several transcriptional states in these cells that are related to how they respond to stress. Cells are able to transition between these states and this might be helpful for them to respond to stress coming at unpredictable times.</p><p>We also highlight issues related to using scRNAseq to look at functional subpopulations of cells.</p><p><a href="https://qoto.org/tags/scrnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>scrnaseq</span></a> <a href="https://qoto.org/tags/stress" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>stress</span></a> <a href="https://qoto.org/tags/physiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>physiology</span></a> <a href="https://qoto.org/tags/cellbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cellbiology</span></a> <a href="https://qoto.org/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://qoto.org/tags/corticotrophs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>corticotrophs</span></a> <a href="https://qoto.org/tags/pituitary" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>pituitary</span></a></p>
CSBJ<p>🧬Can we trust AI in bioinformatics if we don’t understand how it makes decisions? </p><p>As AI becomes central to bioinformatics, the opacity of its decision-making remains a major concern. </p><p>🔗 Demystifying the Black Box: A Survey on Explainable Artificial Intelligence (XAI) in Bioinformatics. Computational and Structural Biotechnology Journal, DOI: <a href="https://doi.org/10.1016/j.csbj.2024.12.027" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">doi.org/10.1016/j.csbj.2024.12</span><span class="invisible">.027</span></a></p><p>📚 CSBJ: <a href="https://www.csbj.org/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">csbj.org/</span><span class="invisible"></span></a></p><p><a href="https://mastodon.social/tags/XAI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>XAI</span></a> <a href="https://mastodon.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> <a href="https://mastodon.social/tags/AIethics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AIethics</span></a> <a href="https://mastodon.social/tags/ExplainableAI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ExplainableAI</span></a> <a href="https://mastodon.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Genomics</span></a> <a href="https://mastodon.social/tags/AI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AI</span></a> <a href="https://mastodon.social/tags/BiomedicalAI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>BiomedicalAI</span></a> <a href="https://mastodon.social/tags/MachineLearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MachineLearning</span></a></p>
naturepoker<p>Does anyone know of a good tanglegram/cophylogram generator in Python? The only option I see is pretty minimal - not really up to par against the R version in features or visual quality. </p><p><a href="https://genomic.social/tags/phylogenetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>phylogenetics</span></a> <a href="https://genomic.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dataviz</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
Egon Willigh☮gen 🟥<p>it seems I just released my first Pypi package every.</p><p>pyBacting 2.14 with Bacting 1.0.5 is now out: <a href="https://pypi.org/project/pybacting/0.2.14/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">pypi.org/project/pybacting/0.2</span><span class="invisible">.14/</span></a></p><p>This gives you access in Python to (some of) the functionality of the Chemistry Development Kit, OPSIN, ChemSpider, PubChem, InChI, Excel files, BridgeDb, and BioJava</p><p><a href="https://mastodon.social/tags/chemistry" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>chemistry</span></a> <a href="https://mastodon.social/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mastodon.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://mastodon.social/tags/cheminformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cheminformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/ampliseq v2.13.0 - Ampliseq Version 2.13.0!</p><p>Please see the changelog: <a href="https://github.com/nf-core/ampliseq/releases/tag/2.13.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/ampliseq/re</span><span class="invisible">leases/tag/2.13.0</span></a></p><p><a href="https://mstdn.science/tags/16s" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>16s</span></a> <a href="https://mstdn.science/tags/18s" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>18s</span></a> <a href="https://mstdn.science/tags/ampliconsequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ampliconsequencing</span></a> <a href="https://mstdn.science/tags/edna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>edna</span></a> <a href="https://mstdn.science/tags/illumina" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>illumina</span></a> <a href="https://mstdn.science/tags/iontorrent" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>iontorrent</span></a> <a href="https://mstdn.science/tags/its" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>its</span></a> <a href="https://mstdn.science/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metabarcoding</span></a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomics</span></a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>microbiome</span></a> <a href="https://mstdn.science/tags/pacbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>pacbio</span></a> <a href="https://mstdn.science/tags/qiime2" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>qiime2</span></a> <a href="https://mstdn.science/tags/rrna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rrna</span></a> <a href="https://mstdn.science/tags/taxonomicclassification" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>taxonomicclassification</span></a> <a href="https://mstdn.science/tags/taxonomicprofiling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>taxonomicprofiling</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/mag v3.4.0 - mag 3.4.0 - Green Gecko!</p><p>Please see the changelog: <a href="https://github.com/nf-core/mag/releases/tag/3.4.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/mag/release</span><span class="invisible">s/tag/3.4.0</span></a></p><p><a href="https://mstdn.science/tags/annotation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>annotation</span></a> <a href="https://mstdn.science/tags/assembly" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>assembly</span></a> <a href="https://mstdn.science/tags/binning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>binning</span></a> <a href="https://mstdn.science/tags/longreadsequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>longreadsequencing</span></a> <a href="https://mstdn.science/tags/metagenomes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomes</span></a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metagenomics</span></a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nanopore</span></a> <a href="https://mstdn.science/tags/nanoporesequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nanoporesequencing</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
Luke Pembleton<p>Cloud computing: where you're not just a bioinformatician, you’re also the finance manager, compliance officer, and IT support, all while carrying a hefty dose of mental fatigue. I miss those PhD days with a inhouse HPC when all you had to do was sbatch every parameter combo under the sun to test your research question… then complain about queue times and who was clogging the damn cluster with their BLAST jobs 😅<br><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
SIB Swiss Bioinformatics<p><span class="h-card" translate="no"><a href="https://genomic.social/@bgeedb" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>bgeedb</span></a></span> was used to design stem-cell based vaccines 💉against <a href="https://mstdn.science/tags/cancer" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cancer</span></a> in mouse models, opening a door to a potential application with humans.</p><p>🔎 This is an example of the impact that <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> databases and tools developed by SIB groups have. Researchers use them to make sense of their data and tackle essential societal challenges.</p><p>👉 Learn more: <a href="https://www.sib.swiss/services/open-software-and-databases/impact#designing-stem-cell-based-vaccines-against-cancer" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">sib.swiss/services/open-softwa</span><span class="invisible">re-and-databases/impact#designing-stem-cell-based-vaccines-against-cancer</span></a></p><p><span class="h-card" translate="no"><a href="https://ecoevo.social/@marcrr" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>marcrr</span></a></span> <span class="h-card" translate="no"><a href="https://ecoevo.social/@fbastian" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>fbastian</span></a></span> </p><p><a href="https://mstdn.science/tags/SIBResourceImpacts" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SIBResourceImpacts</span></a> <a href="https://mstdn.science/tags/OpenSoftwareAndDatabases" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenSoftwareAndDatabases</span></a></p>
Moreno Colaiacovo 🧬🇮🇹<p>Test your <a href="https://mastodon.uno/tags/coding" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>coding</span></a> skills by solving these daily <a href="https://mastodon.uno/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> challenges 🧬</p><p>biocode - Daily Programming Challenges<br><a href="https://www.biocodedaily.com/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="">biocodedaily.com/</span><span class="invisible"></span></a></p>
Benjamin Carr, Ph.D. 👨🏻💻🧬<p><a href="https://hachyderm.io/tags/Genetic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Genetic</span></a> data repo <a href="https://hachyderm.io/tags/OpenSNP" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OpenSNP</span></a> to self-destruct before authoritarians weaponize it<br>The reason, according to <a href="https://hachyderm.io/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> researcher Bastian Greshake Tzovaras, one of the founders of the project, is the dissolution of genetic testing biz <a href="https://hachyderm.io/tags/23andMe" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>23andMe</span></a> and the potential weaponization of genetic data by <a href="https://hachyderm.io/tags/farright" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>farright</span></a> <a href="https://hachyderm.io/tags/authoritarian" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>authoritarian</span></a> regimes. <br><a href="https://www.theregister.com/2025/04/01/opensnp_shutdown/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">theregister.com/2025/04/01/ope</span><span class="invisible">nsnp_shutdown/</span></a></p>
Mark Ziemann 🇺🇦<p>The mitch R/Bioconductor package for enrichment analysis gets new network visualisation function in the devel branch. See these examples for how lung cells respond to C19 infection. Here red=up regulated, blue=down.<br>Details and quickstart guide: <a href="https://genomespot.blogspot.com/2025/04/mitch-gets-upgraded-now-with-gene-set.html" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">genomespot.blogspot.com/2025/0</span><span class="invisible">4/mitch-gets-upgraded-now-with-gene-set.html</span></a><br><a href="https://genomic.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Genomics</span></a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> <a href="https://genomic.social/tags/dataviz" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dataviz</span></a></p>
naturepoker<p>I'm thinking of submitting an Archaeal RNAseq project here.</p><p>Anyone around here in touch with someone at Ultima Genomics? Their sequencing submission web form might have a permission issue :/ </p><p><a href="https://www.ultimagenomics.com/count-on-us/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">ultimagenomics.com/count-on-us</span><span class="invisible">/</span></a></p><p><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
Pierre Lindenbaum<p>asking for a friend: do you know any database/framework to visualize RNAseq data ? (just like <a href="https://github.com/broadinstitute/gnomad-browser" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/broadinstitute/gnom</span><span class="invisible">ad-browser</span></a> for WGS)</p><p><a href="https://genomic.social/tags/database" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>database</span></a> <a href="https://genomic.social/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/variantbenchmarking v1.2.0 - 1.2.0 Doubtful Adams!</p><p>Please see the changelog: <a href="https://github.com/nf-core/variantbenchmarking/releases/tag/1.2.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/variantbenc</span><span class="invisible">hmarking/releases/tag/1.2.0</span></a></p><p><a href="https://mstdn.science/tags/benchmark" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>benchmark</span></a> <a href="https://mstdn.science/tags/draft" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>draft</span></a> <a href="https://mstdn.science/tags/structuralvariants" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>structuralvariants</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
Bioconductor<p>🎉 Announcing the EuroBioC2025 Sticker Design Winner! 🎉</p><p>🏆 Winner: Chaima Hkimi</p><p>🎨 Chaima’s design draws on some of Barcelona’s most iconic landmarks, featuring the Sagrada Família and the vibrant colours of Park Güell. She even swapped the 'i' in 'BioC' for the Bioconductor logo — a creative nod to the project!</p><p>Thanks to everyone who submitted a design. You’ll be able to pick up Chaima’s sticker at EuroBioC2025!</p><p><a href="https://genomic.social/tags/EuroBioC2025" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EuroBioC2025</span></a> <a href="https://genomic.social/tags/Bioconductor" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioconductor</span></a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/StickerContest" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>StickerContest</span></a></p>
SIB Swiss Bioinformatics<p>📣 The programme for the <a href="https://mstdn.science/tags/bc2basel" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bc2basel</span></a> tutorials & workshops is out! From <a href="https://mstdn.science/tags/geneexpression" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>geneexpression</span></a> analysis to <a href="https://mstdn.science/tags/machinelearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>machinelearning</span></a> or <a href="https://mstdn.science/tags/datavisualization" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>datavisualization</span></a>, beginner or advanced: boost your <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> skills!</p><p>👉 Register to make sure to secure your spot (limited seats): <a href="https://tinyurl.com/3y8ay2d6" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">tinyurl.com/3y8ay2d6</span><span class="invisible"></span></a></p>
Headlines Africa<p>Africa: Continued Partnership to Enhance Pathogen Genomic Surveillance and Bioinformatics for Public Health in Africa: [Africa CDC] In a strategic move to bolster Africa's preparedness for future pandemics, the Africa Centres for Disease Control and Prevention (Africa CDC), in partnership with the African Society for Laboratory Medicine (ASLM) and with support from the Mastercard… <a href="http://newsfeed.facilit8.network/TJs8SK" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">http://</span><span class="ellipsis">newsfeed.facilit8.network/TJs8</span><span class="invisible">SK</span></a> <a href="https://journa.host/tags/PublicHealth" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PublicHealth</span></a> <a href="https://journa.host/tags/GenomicSurveillance" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GenomicSurveillance</span></a> <a href="https://journa.host/tags/AfricaCDC" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AfricaCDC</span></a> <a href="https://journa.host/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> <a href="https://journa.host/tags/PandemicPreparedness" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PandemicPreparedness</span></a></p>
naturepoker<p>Check this out, great timing! <br><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> </p><p>Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment | Nature Methods<br><a href="https://www.nature.com/articles/s41592-025-02631-4" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/articles/s41592-025</span><span class="invisible">-02631-4</span></a></p>
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